If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ), 'gf_id' => 'HOM05D000947', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000947' ), 'data_identifier' => 'HOM05D000947', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000947', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17430' => 'bna', 'A01p21480' => 'bna', 'A01p37380' => 'bna', 'A02p08910' => 'bna', 'A02p37990' => 'bna', 'A03p13120' => 'bna', 'A03p39980' => 'bna', 'A03p49600' => 'bna', 'A03p56530' => 'bna', 'A05p32780' => 'bna', 'A06p37100' => 'bna', 'A06p38440' => 'bna', 'A10p14140' => 'bna', 'Aa31LG10G6020' => 'aar', 'Aa31LG11G7830' => 'aar', 'Aa31LG11G9760' => 'aar', 'Aa31LG3G12760' => 'aar', 'Aa31LG3G530' => 'aar', 'Aa31LG5G17330' => 'aar', 'Aa31LG8G3950' => 'aar', 'Actinidia02207' => 'ach', 'Actinidia13373' => 'ach', 'Actinidia14268' => 'ach', 'Actinidia15578' => 'ach', 'Actinidia21016' => 'ach', 'Actinidia21512' => 'ach', 'Actinidia25254' => 'ach', 'Actinidia30312' => 'ach', 'Actinidia35532' => 'ach', 'Actinidia39720' => 'ach', 'Actinidia40348' => 'ach', 'Ah.04g154950' => 'amhyb', 'Ah.06g189070' => 'amhyb', 'Ah.08g213480' => 'amhyb', 'Ah.15g092860' => 'amhyb', 'AL3G17850' => 'aly', 'AL3G29840' => 'aly', 'AL7G26820' => 'aly', 'AL7G39020' => 'aly', 'AL8G22900' => 'aly', 'AL8G32710' => 'aly', 'Aqoxy2G02830' => 'aox', 'Aqoxy3G00135' => 'aox', 'Aqoxy3G00136' => 'aox', 'Aqoxy3G00137' => 'aox', 'Aqoxy4G00560' => 'aox', 'Aqoxy7G01220' => 'aox', 'Aqoxy7G04050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2F7KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2SUK7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36H91F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3E7WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Y7J59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C126L3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6NV9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D56WMI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7WS4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FDN5YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR3GWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY7BN7' => 'arhy', 'AT3G06740' => 'ath', 'AT3G16870' => 'ath', 'AT4G16141' => 'ath', 'AT4G26150' => 'ath', 'AT5G49300' => 'ath', 'AT5G56860' => 'ath', 'ATR0053G048' => 'atr', 'ATR0665G140' => 'atr', 'ATR0706G154' => 'atr', 'ATR0749G084' => 'atr', 'Atru.chr2.133' => 'acertr', 'Atru.chr4.2949' => 'acertr', 'Atru.chr5.1064' => 'acertr', 'Atru.chr7.1064' => 'acertr', 'Atru.chr7.1584' => 'acertr', 'Atru.chr7.1585' => 'acertr', 'AUR62008744' => 'cqu', 'AUR62009149' => 'cqu', 'AUR62016153' => 'cqu', 'AUR62022078' => 'cqu', 'AUR62025495' => 'cqu', 'AUR62035068' => 'cqu', 'BcaB01g04423' => 'bca', 'BcaB04g18913' => 'bca', 'BcaB04g19705' => 'bca', 'BcaB05g22295' => 'bca', 'BcaB06g25783' => 'bca', 'BcaB07g34146' => 'bca', 'BcaB08g36050' => 'bca', 'BcaC01g03799' => 'bca', 'BcaC03g14201' => 'bca', 'BcaC03g17712' => 'bca', 'BcaC03g17822' => 'bca', 'BcaC04g20049' => 'bca', 'BcaC04g23668' => 'bca', 'BcaC05g28842' => 'bca', 'BcaC05g30554' => 'bca', 'BcaC06g32766' => 'bca', 'BcaC06g32986' => 'bca', 'BcaC06g33468' => 'bca', 'BcaC09g47916' => 'bca', 'BcaC09g48646' => 'bca', 'BcaC09g50304' => 'bca', 'BcaC09g50673' => 'bca', 'BcaNung00224' => 'bca', 'BcaNung02447' => 'bca', 'BcaNung02595' => 'bca', 'BcaNung03666' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00050' => 'bna', 'BolC1t02124H' => 'bol', 'BolC1t02626H' => 'bol', 'BolC1t04701H' => 'bol', 'BolC1t05589H' => 'bol', 'BolC2t07616H' => 'bol', 'BolC2t11911H' => 'bol', 'BolC3t13976H' => 'bol', 'BolC3t17127H' => 'bol', 'BolC5t33698H' => 'bol', 'BolC7t44511H' => 'bol', 'BolC7t44661H' => 'bol', 'BolC7t44662H' => 'bol', 'BolC7t45289H' => 'bol', 'BolC7t45961H' => 'bol', 'BolC9t57690H' => 'bol', 'BraA01t01698Z' => 'bra', 'BraA01t02055Z' => 'bra', 'BraA01t03796Z' => 'bra', 'BraA02t05960Z' => 'bra', 'BraA03t10623Z' => 'bra', 'BraA03t13146Z' => 'bra', 'BraA03t14057Z' => 'bra', 'BraA03t14723Z' => 'bra', 'BraA05t22100Z' => 'bra', 'BraA06t26635Z' => 'bra', 'BraA06t26758Z' => 'bra', 'BraA10t43506Z' => 'bra', 'C01p21950' => 'bna', 'C01p26820' => 'bna', 'C01p47310' => 'bna', 'C02p14870' => 'bna', 'C02p57150' => 'bna', 'C02p57190' => 'bna', 'C02p58500' => 'bna', 'C03p15340' => 'bna', 'C03p48500' => 'bna', 'C05p49480' => 'bna', 'C07p39830' => 'bna', 'C07p41330' => 'bna', 'C07p47660' => 'bna', 'C07p54720' => 'bna', 'C09p06180' => 'bna', 'C09p48470' => 'bna', 'CAN.G1013.35' => 'can', 'CAN.G1013.36' => 'can', 'CAN.G1241.21' => 'can', 'CAN.G1273.11' => 'can', 'CAN.G197.21' => 'can', 'CAN.G484.54' => 'can', 'CAN.G668.29' => 'can', 'CANSAT54G2371' => 'cansat', 'CANSAT56G0159' => 'cansat', 'CANSAT56G4332' => 'cansat', 'CANSAT78G2367' => 'cansat', 'CARHR081350' => 'chi', 'CARHR092140' => 'chi', 'CARHR182300' => 'chi', 'CARHR222430' => 'chi', 'CARHR233670' => 'chi', 'CARHR270600' => 'chi', 'Carub.0003s0628' => 'cru', 'Carub.0003s1659' => 'cru', 'Carub.0007s1480' => 'cru', 'Carub.0007s2546' => 'cru', 'Carub.0008s0911' => 'cru', 'Carub.0008s1732' => 'cru', 'Ca_09303_v3' => 'car', 'Ca_21277_v3' => 'car', 'Ca_21460_v3' => 'car', 'Cc02_g30320' => 'ccan', 'Cc02_g34640' => 'ccan', 'Cc03_g01210' => 'ccan', 'Cc03_g16300' => 'ccan', 'Cc06_g11380' => 'ccan', 'Cc08_g11860' => 'ccan', 'CDE01G0054' => 'cde', 'CDE02G0664' => 'cde', 'CDE05G2491' => 'cde', 'CDE05G2605' => 'cde', 'CDE05G2735' => 'cde', 'CDE06G0020' => 'cde', 'CDE07G1177' => 'cde', 'CDE08G1037' => 'cde', 'CDE11G0437' => 'cde', 'Cfa003091' => 'cfa', 'Cfa015476' => 'cfa', 'Cfa017954' => 'cfa', 'Ciclev10003698m.g' => 'ccl', 'Ciclev10006161m.g' => 'ccl', 'Ciclev10008943m.g' => 'ccl', 'Ciclev10008968m.g' => 'ccl', 'Ciclev10009004m.g' => 'ccl', 'Ciclev10022856m.g' => 'ccl', 'CiPaw.01G142600' => 'cil', 'CiPaw.02G077400' => 'cil', 'CiPaw.03G216700' => 'cil', 'CiPaw.08G157500' => 'cil', 'CiPaw.10G131900' => 'cil', 'CiPaw.15G038900' => 'cil', 'CiPaw.16G028700' => 'cil', 'ClCG03G015640' => 'cla', 'ClCG03G017510' => 'cla', 'ClCG05G006370' => 'cla', 'ClCG05G017860' => 'cla', 'ClCG06G004790' => 'cla', 'COL.COLO4_04128' => 'col', 'COL.COLO4_18205' => 'col', 'COL.COLO4_21058' => 'col', 'COL.COLO4_23277' => 'col', 'COL.COLO4_34678' => 'col', 'Cpa.g.sc151.51' => 'cpa', 'Cpa.g.sc48.133' => 'cpa', 'Cpa.g.sc9.102' => 'cpa', 'Cpa.g.sc93.28' => 'cpa', 'CsaV3_1G038510' => 'csa', 'CsaV3_1G040390' => 'csa', 'CsaV3_3G015000' => 'csa', 'CsaV3_4G035630' => 'csa', 'CsaV3_6G022580' => 'csa', 'CSS0013528' => 'camsi', 'CSS0018452' => 'camsi', 'CSS0025336' => 'camsi', 'CSS0029151' => 'camsi', 'CSS0035673' => 'camsi', 'CSS0037693' => 'camsi', 'CSS0044519' => 'camsi', 'CSS0047041' => 'camsi', 'CSS0047505' => 'camsi', 'CSS0048891' => 'camsi', 'CSS0049513' => 'camsi', 'DCAR_002499' => 'dca', 'DCAR_004426' => 'dca', 'DCAR_005777' => 'dca', 'DCAR_011976' => 'dca', 'DCAR_027021' => 'dca', 'DCAR_030484' => 'dca', 'DCAR_032241' => 'dca', 'Dinv02069' => 'din', 'Dinv10059' => 'din', 'Dinv24417' => 'din', 'Dinv27985' => 'din', 'Dinv30862' => 'din', 'Dinv36320' => 'din', 'Dinv36764' => 'din', 'Dinv42316' => 'din', 'Dinv44322' => 'din', 'Duzib052G0902' => 'dzi', 'Duzib106G0473' => 'dzi', 'Duzib106G1584' => 'dzi', 'Duzib138G1540' => 'dzi', 'Duzib151G1181' => 'dzi', 'Duzib168G0218' => 'dzi', 'Duzib168G0908' => 'dzi', 'Duzib177G0773' => 'dzi', 'Duzib212G0811' => 'dzi', 'ECA233G3444' => 'eca', 'ECA234G0279' => 'eca', 'ECA236G4712' => 'eca', 'ECA236G5101' => 'eca', 'ECA240G0019' => 'eca', 'ECA246G1347' => 'eca', 'EL10Ac2g03883' => 'bvu', 'EL10Ac3g04929' => 'bvu', 'EL10Ac7g17612' => 'bvu', 'Eucgr.A00193' => 'egr', 'Eucgr.B02079' => 'egr', 'Eucgr.C00899' => 'egr', 'Eucgr.C03048' => 'egr', 'Eucgr.C03895' => 'egr', 'Eucgr.H01071' => 'egr', 'Eucgr.H04023' => 'egr', 'FAN07G1787' => 'fan', 'FAN12G1806' => 'fan', 'FAN12G3889' => 'fan', 'FAN15G1584' => 'fan', 'FAN19G1273' => 'fan', 'FAN20G2476' => 'fan', 'FAN24G3149' => 'fan', 'FAN26G0477' => 'fan', 'FAN26G2844' => 'fan', 'FAN27G0626' => 'fan', 'FAN28G2967' => 'fan', 'FvH4_1g07390' => 'fve', 'FvH4_2g31930' => 'fve', 'FvH4_4g19260' => 'fve', 'Glyma.04G051300' => 'gma', 'Glyma.07G243000' => 'gma', 'Glyma.09G062800' => 'gma', 'Glyma.13G103900' => 'gma', 'Glyma.14G094800' => 'gma', 'Glyma.15G169300' => 'gma', 'Glyma.17G030900' => 'gma', 'Glyma.17G055200' => 'gma', 'Glyma.17G228700' => 'gma', 'Glyma.19G229900' => 'gma', 'Gohir.A01G033700' => 'ghi', 'Gohir.A02G052901' => 'ghi', 'Gohir.A05G029800' => 'ghi', 'Gohir.A05G042200' => 'ghi', 'Gohir.A06G072400' => 'ghi', 'Gohir.A06G089500' => 'ghi', 'Gohir.A11G111700' => 'ghi', 'Gohir.A12G127400' => 'ghi', 'Gohir.A13G111375' => 'ghi', 'Gohir.A13G175000' => 'ghi', 'Gohir.D01G023517' => 'ghi', 'Gohir.D02G057800' => 'ghi', 'Gohir.D05G031200' => 'ghi', 'Gohir.D05G043900' => 'ghi', 'Gohir.D06G071000' => 'ghi', 'Gohir.D06G087500' => 'ghi', 'Gohir.D11G116833' => 'ghi', 'Gohir.D12G130900' => 'ghi', 'Gohir.D13G114000' => 'ghi', 'Gohir.D13G180900' => 'ghi', 'Gorai.002G029400' => 'gra', 'Gorai.005G065300' => 'gra', 'Gorai.007G125000' => 'gra', 'Gorai.008G142200' => 'gra', 'Gorai.009G031400' => 'gra', 'Gorai.009G045000' => 'gra', 'Gorai.010G082800' => 'gra', 'Gorai.010G101100' => 'gra', 'Gorai.013G127900' => 'gra', 'Gorai.013G206400' => 'gra', 'GSVIVG01015204001' => 'vvi', 'GSVIVG01031203001' => 'vvi', 'GSVIVG01035048001' => 'vvi', 'GSVIVG01035406001' => 'vvi', 'HanXRQChr02g0049061' => 'han', 'HanXRQChr03g0060441' => 'han', 'HanXRQChr06g0167791' => 'han', 'HanXRQChr08g0220821' => 'han', 'HanXRQChr09g0238131' => 'han', 'HanXRQChr12g0354821' => 'han', 'HanXRQChr13g0394421' => 'han', 'Haze_01093' => 'cav', 'Haze_04091' => 'cav', 'Haze_18190' => 'cav', 'Haze_25908' => 'cav', 'Hma1.2p1_0013F.1_g008970' => 'hma', 'Hma1.2p1_0078F.1_g040180' => 'hma', 'Hma1.2p1_0482F.1_g162420' => 'hma', 'Hma1.2p1_0798F.1_g219800' => 'hma', 'Hma1.2p1_0800F.1_g220120' => 'hma', 'HPP92_005525' => 'vpl', 'HPP92_009137' => 'vpl', 'HPP92_017232' => 'vpl', 'HPP92_020003' => 'vpl', 'HPP92_021754' => 'vpl', 'HPP92_023389' => 'vpl', 'Hund03096' => 'sun', 'Hund05460' => 'sun', 'Hund07127' => 'sun', 'Hund11950' => 'sun', 'Hund19451' => 'sun', 'Lalb_Chr07g0180811' => 'lal', 'Lalb_Chr08g0232061' => 'lal', 'Lalb_Chr11g0063121' => 'lal', 'Lalb_Chr12g0200991' => 'lal', 'Lalb_Chr13g0298321' => 'lal', 'Lalb_Chr13g0299731' => 'lal', 'Lj1g0012894' => 'lja', 'Lj3A827T61' => 'lonja', 'Lj4g0003510' => 'lja', 'Lj4g0025871' => 'lja', 'Lj5g0028237' => 'lja', 'Lj6A684T57' => 'lonja', 'Lj6g0026749' => 'lja', 'Lj7A675G39' => 'lonja', 'Lsat_1_v5_gn_5_145340' => 'lsa', 'Lsat_1_v5_gn_6_115200' => 'lsa', 'Lsat_1_v5_gn_6_19400' => 'lsa', 'Lsat_1_v5_gn_7_37240' => 'lsa', 'Lsat_1_v5_gn_7_73740' => 'lsa', 'Lsat_1_v5_gn_8_166400' => 'lsa', 'Manes.01G224400' => 'mes', 'Manes.03G033200' => 'mes', 'Manes.03G047800' => 'mes', 'Manes.03G201300' => 'mes', 'Manes.08G113300' => 'mes', 'Manes.09G174900' => 'mes', 'Manes.15G007100' => 'mes', 'Manes.16G080400' => 'mes', 'Manes.16G102600' => 'mes', 'MBI01_g09952_MAGBIO' => 'mbi', 'MBI04_g34133_MAGBIO' => 'mbi', 'MBI16_g36724_MAGBIO' => 'mbi', 'MBI18_g04586_MAGBIO' => 'mbi', 'MBI18_g05085_MAGBIO' => 'mbi', 'MD02G1078700' => 'mdo', 'MD08G1061600' => 'mdo', 'MD12G1208800' => 'mdo', 'MD13G1159000' => 'mdo', 'MD15G1060100' => 'mdo', 'MD15G1206700' => 'mdo', 'MD16G1159200' => 'mdo', 'Medtr1g016200' => 'mtr', 'Medtr2g038720' => 'mtr', 'Medtr4g121110' => 'mtr', 'Medtr4g126350' => 'mtr', 'Medtr7g112330' => 'mtr', 'MELO3C006696.2' => 'cme', 'MELO3C015277.2' => 'cme', 'MELO3C015468.2' => 'cme', 'MELO3C016870.2' => 'cme', 'MELO3C021288.2' => 'cme', 'Migut.B00988' => 'egut', 'Migut.D00108' => 'egut', 'Migut.G00106' => 'egut', 'Migut.J00606' => 'egut', 'Migut.L01490' => 'egut', 'MSTRG.10130' => 'ama', 'MSTRG.10566' => 'ama', 'MSTRG.17392' => 'ama', 'MSTRG.18121' => 'ama', 'MSTRG.19517' => 'ama', 'MSTRG.20393' => 'ama', 'MSTRG.21663' => 'ama', 'MSTRG.3873' => 'ama', 'Nitab4.5_0000116g0140' => 'nta', 'Nitab4.5_0000368g0380' => 'nta', 'Nitab4.5_0000570g0300' => 'nta', 'Nitab4.5_0000803g0070' => 'nta', 'Nitab4.5_0001097g0070' => 'nta', 'Nitab4.5_0002715g0010' => 'nta', 'Nitab4.5_0003484g0090' => 'nta', 'Nitab4.5_0005033g0050' => 'nta', 'Nitab4.5_0005180g0060' => 'nta', 'Nitab4.5_0007972g0010' => 'nta', 'Nitab4.5_0009931g0020' => 'nta', 'Nn3g21608' => 'nnu', 'Nn4g25675' => 'nnu', 'Nn6g35464' => 'nnu', 'Nn8g38877' => 'nnu', 'Oeu006436.1' => 'oeu', 'Oeu006972.1' => 'oeu', 'Oeu016477.1' => 'oeu', 'Oeu017655.1' => 'oeu', 'Oeu042649.1' => 'oeu', 'Oeu053691.1' => 'oeu', 'Oeu054102.1' => 'oeu', 'Os01g0976800' => 'osa', 'Os02g0220400' => 'osa', 'Os03g0831200' => 'osa', 'Os05g0155400' => 'osa', 'Os06g0571800' => 'osa', 'Peaxi162Scf00001g00285' => 'pax', 'Peaxi162Scf00017g00611' => 'pax', 'Peaxi162Scf00065g00327' => 'pax', 'Peaxi162Scf00073g00224' => 'pax', 'Peaxi162Scf00102g00111' => 'pax', 'Peaxi162Scf00354g00048' => 'pax', 'Peaxi162Scf00498g00122' => 'pax', 'PGR004G0579' => 'pgr', 'PGR031G2113' => 'pgr', 'PGR044G2077' => 'pgr', 'PGR083G1724' => 'pgr', 'PGR119G1670' => 'pgr', 'PGR142G2851' => 'pgr', 'PGSC0003DMG400000280' => 'stu', 'PGSC0003DMG400002337' => 'stu', 'PGSC0003DMG400004493' => 'stu', 'PGSC0003DMG400004624' => 'stu', 'PGSC0003DMG400023434' => 'stu', 'PGSC0003DMG400024783' => 'stu', 'PGSC0003DMG400031828' => 'stu', 'Phvul.001G035600' => 'pvu', 'Phvul.001G226500' => 'pvu', 'Phvul.003G110400' => 'pvu', 'Phvul.003G137100' => 'pvu', 'Phvul.009G077500' => 'pvu', 'Phvul.009G232700' => 'pvu', 'Potri.002G199800' => 'ptr', 'Potri.005G020500' => 'ptr', 'Potri.006G229200' => 'ptr', 'Potri.008G213900' => 'ptr', 'Potri.010G001300' => 'ptr', 'Potri.014G124400' => 'ptr', 'Potri.018G053600' => 'ptr', 'Prupe.1G126000' => 'ppe', 'Prupe.1G412000' => 'ppe', 'Prupe.6G316000' => 'ppe', 'Prupe.7G210100' => 'ppe', 'Prupe.8G268900' => 'ppe', 'Psat0s1646g0400' => 'psa', 'Psat0s2521g0040' => 'psa', 'Psat1g141680' => 'psa', 'Psat4g014760' => 'psa', 'Psat6g020240' => 'psa', 'PSO170G2932' => 'pso', 'PSO170G5280' => 'pso', 'PSO210G0629' => 'pso', 'PSO210G2956' => 'pso', 'PSO302G0305' => 'pso', 'PSO357G0116' => 'pso', 'QL02p001206' => 'qlo', 'QL03p018017' => 'qlo', 'QL06p011255' => 'qlo', 'QL09p010783' => 'qlo', 'QL12p028836' => 'qlo', 'RcHm_v2.0_Chr2g0093271' => 'rch', 'RcHm_v2.0_Chr4g0424251' => 'rch', 'RcHm_v2.0_Chr6g0310911' => 'rch', 'Rhsim02G0006100' => 'rsi', 'Rhsim03G0232600' => 'rsi', 'Rhsim04G0231900' => 'rsi', 'Rhsim05G0021900' => 'rsi', 'Rhsim05G0134000' => 'rsi', 'Rhsim11G0044100' => 'rsi', 'Sabra02G0158600' => 'sbr', 'Sabra05G0026500' => 'sbr', 'Sabra06G0177700' => 'sbr', 'Sabra08G0149800' => 'sbr', 'Sabra10G0001000' => 'sbr', 'Sabra14G0092500' => 'sbr', 'Sabra15G0065300' => 'sbr', 'Sabra18G0048900' => 'sbr', 'SalBow2G2661' => 'sbo', 'SalBow6G2589' => 'sbo', 'SalBow7G3126' => 'sbo', 'SalBow8G3102' => 'sbo', 'SalBow8G4529' => 'sbo', 'Sc18g0002000' => 'sci', 'Sc25g0003460' => 'sci', 'Sed0002794' => 'sed', 'Sed0004649' => 'sed', 'Sed0006924' => 'sed', 'Sed0013555' => 'sed', 'Sed0021855' => 'sed', 'Sed0022846' => 'sed', 'Sed0027633' => 'sed', 'SEGI_27924' => 'sgi', 'SGA_v2.0_scaffold18G08377' => 'sas', 'SGA_v2.0_scaffold21G09372' => 'sas', 'SGA_v2.0_scaffold23G10000' => 'sas', 'SGA_v2.0_scaffold374G50209' => 'sas', 'SGA_v2.0_scaffold376G50262' => 'sas', 'SGA_v2.0_scaffold3G01558' => 'sas', 'SGA_v2.0_scaffold444G51713' => 'sas', 'SGA_v2.0_scaffold53G19316' => 'sas', 'SHI00182' => 'shi', 'SHI00183' => 'shi', 'Solyc01g060490.4' => 'sly', 'Solyc01g100220.3' => 'sly', 'Solyc05g054400.3' => 'sly', 'Solyc07g038160.4' => 'sly', 'Solyc09g075610.3' => 'sly', 'Solyc12g008830.3' => 'sly', 'Solyc12g099370.2' => 'sly', 'Sopen01g026800' => 'spe', 'Sopen05g032880' => 'spe', 'Sopen07g018310' => 'spe', 'Sopen09g030410' => 'spe', 'Sopen12g003760' => 'spe', 'Sopen12g034040' => 'spe', 'Sp2g19650' => 'spa', 'Sp2g21100' => 'spa', 'Sp3g05710' => 'spa', 'Sp3g15120' => 'spa', 'Sp6g18580' => 'spa', 'Sp7g14610' => 'spa', 'Sp7g24170' => 'spa', 'TAR362G0689' => 'tar', 'TAR365G0972' => 'tar', 'TAR383G0027' => 'tar', 'TAR624G0462' => 'tar', 'TAR626G1258' => 'tar', 'TAR636G0193' => 'tar', 'TAR636G3276' => 'tar', 'THA.LOC104802699' => 'tha', 'THA.LOC104813261' => 'tha', 'THA.LOC104818113' => 'tha', 'THA.LOC104818898' => 'tha', 'THA.LOC104820276' => 'tha', 'THA.LOC104821790' => 'tha', 'Thecc.01G308700' => 'tca', 'Thecc.04G294500' => 'tca', 'Thecc.05G319600' => 'tca', 'Thecc.09G053800' => 'tca', 'Thecc.09G089800' => 'tca', 'Thhalv10005103m.g' => 'esa', 'Thhalv10005181m.g' => 'esa', 'Thhalv10013793m.g' => 'esa', 'Thhalv10021612m.g' => 'esa', 'Thhalv10021708m.g' => 'esa', 'Thhalv10025461m.g' => 'esa', 'Thhalv10026300m.g' => 'esa', 'TPR.G13166' => 'tpr', 'TPR.G1666' => 'tpr', 'TPR.G16825' => 'tpr', 'TPR.G35459' => 'tpr', 'TPR.G893' => 'tpr', 'TWI09G0287' => 'twi', 'TWI12G0164' => 'twi', 'TWI34G0236' => 'twi', 'TWI34G0815' => 'twi', 'TWI36G0181' => 'twi', 'TWI53G1518' => 'twi', 'TWI63G0009' => 'twi', 'TWI63G0044' => 'twi', 'TWI73G0953' => 'twi', 'unitig_32.g10638' => 'ugi', 'unitig_32.g11857' => 'ugi', 'unitig_748.g8714' => 'ugi', 'unitig_85.g27173' => 'ugi', 'unitig_88.g27708' => 'ugi', 'vmacro02421' => 'vma', 'vmacro06289' => 'vma', 'vmacro08079' => 'vma', 'vmacro15201' => 'vma', 'vmacro17228' => 'vma', 'vmacro19717' => 'vma', 'VMungo0647G0164' => 'vmu', 'VMungo1215G0469' => 'vmu', 'VMungo1215G1095' => 'vmu', 'VMungo1309G0324' => 'vmu', 'VMungo1309G2623' => 'vmu', 'VMungo1383G0309' => 'vmu', 'Zm00001eb063610' => 'zma', 'Zm00001eb240100' => 'zma', 'Zm00001eb282810' => 'zma', 'Zm00001eb362090' => 'zma', 'Zm00001eb385190' => 'zma' ) $gf_id = 'HOM05D000947' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000947' ) $data_identifier = 'HOM05D000947' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 3, 'lsa' => (int) 6, 'mes' => (int) 9, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 3, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 8, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385190' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1